MRIQC: individual T1w report

Summary

Subject ID: 030_ExercisePre.
Date and time: 2018-05-06, 22:28.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.28590470654168293
cnr			3.562495668034981
efc			0.578668284665291
fber			114.02033996582031
fwhm	avg		3.937453333333334
fwhm	x		3.8413
fwhm	y		4.08473
fwhm	z		3.88633
icvs	csf		0.20337917410512266
icvs	gm		0.45274270558180685
icvs	wm		0.34387812031307047
inu	med		0.7607671618461609
inu	range		0.25524622201919556
qi	1		0.0
qi	2		0.0007215817078964817
rpve	csf		24.33635958444761
rpve	gm		12.164683313415939
rpve	wm		19.00761493786704
size	x		180
size	y		256
size	z		256
snr	csf		2.9911252707151252
snr	gm		10.638009672425154
snr	total		8.429205380588487
snr	wm		11.658481198625182
snrd	csf		15.56434662742827
snrd	gm		27.47613456903772
snrd	total		28.99738886369525
snrd	wm		43.95168539461976
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	1.8586267824878275
summary	bg	mad	14.905993461608887
summary	bg	mean	48.754337310791016
summary	bg	median	46.55953598022461
summary	bg	n	2806719.0
summary	bg	p05	27.023556327819826
summary	bg	p95	77.92670211791994
summary	bg	stdv	16.16735076904297
summary	csf	k	-0.11147898886721919
summary	csf	mad	130.9265899658203
summary	csf	mean	348.9398498535156
summary	csf	median	354.12786865234375
summary	csf	n	10752.0
summary	csf	p05	161.80138931274416
summary	csf	p95	530.547152709961
summary	csf	stdv	118.3873519897461
summary	gm	k	0.09876522695330703
summary	gm	mad	59.061798095703125
summary	gm	mean	623.857666015625
summary	gm	median	625.15087890625
summary	gm	n	38858.0
summary	gm	p05	525.3095001220703
summary	gm	p95	717.3005920410156
summary	gm	stdv	58.765018463134766
summary	wm	k	1.2350876934223116
summary	wm	mad	48.11245346069336
summary	wm	mean	975.0310668945312
summary	wm	median	1000.0109252929688
summary	wm	n	183431.0
summary	wm	p05	775.5316772460938
summary	wm	p95	1066.6441650390625
summary	wm	stdv	85.7751693725586
tpm	overlap	csf	0.2019559144973755
tpm	overlap	gm	0.5296800136566162
tpm	overlap	wm	0.5512219071388245
wm2max			0.7175055669824831

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	3cb63dddbd9443b8d8e17b028a02a170
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.