MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.28590470654168293
cnr3.562495668034981
efc0.578668284665291
fber114.02033996582031
fwhmavg3.937453333333334
fwhmx3.8413
fwhmy4.08473
fwhmz3.88633
icvscsf0.20337917410512266
icvsgm0.45274270558180685
icvswm0.34387812031307047
inumed0.7607671618461609
inurange0.25524622201919556
qi10.0
qi20.0007215817078964817
rpvecsf24.33635958444761
rpvegm12.164683313415939
rpvewm19.00761493786704
sizex180
sizey256
sizez256
snrcsf2.9911252707151252
snrgm10.638009672425154
snrtotal8.429205380588487
snrwm11.658481198625182
snrdcsf15.56434662742827
snrdgm27.47613456903772
snrdtotal28.99738886369525
snrdwm43.95168539461976
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk1.8586267824878275
summarybgmad14.905993461608887
summarybgmean48.754337310791016
summarybgmedian46.55953598022461
summarybgn2806719.0
summarybgp0527.023556327819826
summarybgp9577.92670211791994
summarybgstdv16.16735076904297
summarycsfk-0.11147898886721919
summarycsfmad130.9265899658203
summarycsfmean348.9398498535156
summarycsfmedian354.12786865234375
summarycsfn10752.0
summarycsfp05161.80138931274416
summarycsfp95530.547152709961
summarycsfstdv118.3873519897461
summarygmk0.09876522695330703
summarygmmad59.061798095703125
summarygmmean623.857666015625
summarygmmedian625.15087890625
summarygmn38858.0
summarygmp05525.3095001220703
summarygmp95717.3005920410156
summarygmstdv58.765018463134766
summarywmk1.2350876934223116
summarywmmad48.11245346069336
summarywmmean975.0310668945312
summarywmmedian1000.0109252929688
summarywmn183431.0
summarywmp05775.5316772460938
summarywmp951066.6441650390625
summarywmstdv85.7751693725586
tpmoverlapcsf0.2019559144973755
tpmoverlapgm0.5296800136566162
tpmoverlapwm0.5512219071388245
wm2max0.7175055669824831

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sum3cb63dddbd9443b8d8e17b028a02a170
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.